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3502 type a genome sequence  (ATCC)


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    ATCC 3502 type a genome sequence
    CGH results of outbreak-related type A1 strains Notes: The top track depicts each coding region sequence (CDS) in the C. botulinum strain ATCC <t>3502</t> genome sequence. Subsequent tracks depict log2 signal ratios of the reference strain (ATCC3502) compared to each test strain (indicated below each track). Regions whose presence varies among outbreak-pairs are circled and their genomic location relative to ATCC 3502 genome is depicted by a letter above the top track. Region A corresponds to a ferrichrome uptake system, region B corresponds to a restriction/modification system, and region C corresponds to a glycosyltransferase.
    3502 Type A Genome Sequence, supplied by ATCC, used in various techniques. Bioz Stars score: 96/100, based on 335 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/3502+genome+sequence/HCT116-SLC35F2-KO-c2/pmc11310924-143-21-20
    Average 96 stars, based on 335 article reviews
    3502 type a genome sequence - by Bioz Stars, 2026-08
    96/100 stars

    Images

    1) Product Images from "Exploring genomic diversity in Clostridium botulinum using DNA microarrays"

    Article Title: Exploring genomic diversity in Clostridium botulinum using DNA microarrays

    Journal: The botulinum journal

    doi: 10.1504/tbj.2012.050195

    CGH results of outbreak-related type A1 strains Notes: The top track depicts each coding region sequence (CDS) in the C. botulinum strain ATCC 3502 genome sequence. Subsequent tracks depict log2 signal ratios of the reference strain (ATCC3502) compared to each test strain (indicated below each track). Regions whose presence varies among outbreak-pairs are circled and their genomic location relative to ATCC 3502 genome is depicted by a letter above the top track. Region A corresponds to a ferrichrome uptake system, region B corresponds to a restriction/modification system, and region C corresponds to a glycosyltransferase.
    Figure Legend Snippet: CGH results of outbreak-related type A1 strains Notes: The top track depicts each coding region sequence (CDS) in the C. botulinum strain ATCC 3502 genome sequence. Subsequent tracks depict log2 signal ratios of the reference strain (ATCC3502) compared to each test strain (indicated below each track). Regions whose presence varies among outbreak-pairs are circled and their genomic location relative to ATCC 3502 genome is depicted by a letter above the top track. Region A corresponds to a ferrichrome uptake system, region B corresponds to a restriction/modification system, and region C corresponds to a glycosyltransferase.

    Techniques Used: Sequencing, Modification

    Scheme used to select probes for the Group I subtyping microarray Notes: A total of 225 probes were selected. 146 probes corresponding to strain variable regions of the ATCC 3502 genome sequence were selected based on CGH analysis using Group I types A, B, and F test strains. In silico analysis was used to select the remaining probes representing genes not present in ATCC 3502, specific for either OkraB or LanglelandF strains, or other specific genes of interest.
    Figure Legend Snippet: Scheme used to select probes for the Group I subtyping microarray Notes: A total of 225 probes were selected. 146 probes corresponding to strain variable regions of the ATCC 3502 genome sequence were selected based on CGH analysis using Group I types A, B, and F test strains. In silico analysis was used to select the remaining probes representing genes not present in ATCC 3502, specific for either OkraB or LanglelandF strains, or other specific genes of interest.

    Techniques Used: Microarray, Sequencing, In Silico



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    Image Search Results


    CGH results of outbreak-related type A1 strains Notes: The top track depicts each coding region sequence (CDS) in the C. botulinum strain ATCC 3502 genome sequence. Subsequent tracks depict log2 signal ratios of the reference strain (ATCC3502) compared to each test strain (indicated below each track). Regions whose presence varies among outbreak-pairs are circled and their genomic location relative to ATCC 3502 genome is depicted by a letter above the top track. Region A corresponds to a ferrichrome uptake system, region B corresponds to a restriction/modification system, and region C corresponds to a glycosyltransferase.

    Journal: The botulinum journal

    Article Title: Exploring genomic diversity in Clostridium botulinum using DNA microarrays

    doi: 10.1504/tbj.2012.050195

    Figure Lengend Snippet: CGH results of outbreak-related type A1 strains Notes: The top track depicts each coding region sequence (CDS) in the C. botulinum strain ATCC 3502 genome sequence. Subsequent tracks depict log2 signal ratios of the reference strain (ATCC3502) compared to each test strain (indicated below each track). Regions whose presence varies among outbreak-pairs are circled and their genomic location relative to ATCC 3502 genome is depicted by a letter above the top track. Region A corresponds to a ferrichrome uptake system, region B corresponds to a restriction/modification system, and region C corresponds to a glycosyltransferase.

    Article Snippet: Our laboratory developed a comparative genomic hybridisation (CGH) microarray featuring a total of 384,771 overlapping probes (~50–70 bp) representing the ATCC 3502 type A genome sequence in order to evaluate the level of genomic diversity among C. botulinum strains ( Raphael et al., 2008 ).

    Techniques: Sequencing, Modification

    Scheme used to select probes for the Group I subtyping microarray Notes: A total of 225 probes were selected. 146 probes corresponding to strain variable regions of the ATCC 3502 genome sequence were selected based on CGH analysis using Group I types A, B, and F test strains. In silico analysis was used to select the remaining probes representing genes not present in ATCC 3502, specific for either OkraB or LanglelandF strains, or other specific genes of interest.

    Journal: The botulinum journal

    Article Title: Exploring genomic diversity in Clostridium botulinum using DNA microarrays

    doi: 10.1504/tbj.2012.050195

    Figure Lengend Snippet: Scheme used to select probes for the Group I subtyping microarray Notes: A total of 225 probes were selected. 146 probes corresponding to strain variable regions of the ATCC 3502 genome sequence were selected based on CGH analysis using Group I types A, B, and F test strains. In silico analysis was used to select the remaining probes representing genes not present in ATCC 3502, specific for either OkraB or LanglelandF strains, or other specific genes of interest.

    Article Snippet: Our laboratory developed a comparative genomic hybridisation (CGH) microarray featuring a total of 384,771 overlapping probes (~50–70 bp) representing the ATCC 3502 type A genome sequence in order to evaluate the level of genomic diversity among C. botulinum strains ( Raphael et al., 2008 ).

    Techniques: Microarray, Sequencing, In Silico